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1.
Chem Phys Lipids ; 235: 105051, 2021 03.
Artículo en Inglés | MEDLINE | ID: mdl-33460592

RESUMEN

Novel quaternary ammonium surfactants (QUATs) derived from phenylalaninyl-proline dipeptide with chain length C12 and C14 were synthesised as potential active ingredients to be used in body cleansing formulations. The physicochemical properties and biological activities of the QUATs were determined in both single and in mixed surfactant system with either the conventional anionic surfactant sodium dodecyl sulphate (SDS) or sodium N-dodecyl prolinate. The C12 QUAT derivative showed antagonistic behaviour in both SDS and sodium N-dodecyl prolinate mixed surfactant system. Comparing the mixed system of the C12 QUAT with SDS and sodium N-dodecyl prolinate, it was found that the latter displayed better antibacterial activity together with the lower ocular irritation. The C12 QUAT-sodium N-dodecyl prolinate mixture were non cytotoxic at a concentration corresponding to its MIC value, showing that the mixture was selective towards bacterial cells rather than mammalian cell lines. Diffusion measurements showed that the sodium N-dodecyl prolinate surfactant consisted of 26 molecules per micelle in water but only 3 molecules per micelle in DMSO/water (1:1). On the other hand, C12 QUAT did not form a micelle in DMSO/Water. Membrane permeability studies of the C12 QUAT and sodium N-dodecyl prolinate showed that these surfactants are capable to penetrate into deeper skin layers to exert their antibacterial and cleansing action and hence can be used as a promising candidate as active ingredients in body wash formulations.


Asunto(s)
Aminoácidos Aromáticos/farmacología , Aminoácidos Cíclicos/farmacología , Bacterias Gramnegativas/efectos de los fármacos , Bacterias Grampositivas/efectos de los fármacos , Compuestos de Amonio Cuaternario/farmacología , Aminoácidos Aromáticos/química , Aminoácidos Cíclicos/química , Antibacterianos , Línea Celular , Supervivencia Celular/efectos de los fármacos , Relación Dosis-Respuesta a Droga , Humanos , Pruebas de Sensibilidad Microbiana , Estructura Molecular , Compuestos de Amonio Cuaternario/síntesis química , Compuestos de Amonio Cuaternario/química , Tensoactivos/química , Tensoactivos/farmacología
2.
Eur J Med Chem ; 208: 112736, 2020 Dec 15.
Artículo en Inglés | MEDLINE | ID: mdl-32966895

RESUMEN

Tailor-made AAs are indispensable components of modern medicinal chemistry and are becoming increasingly prominent in new drugs. In fact, about 30% of small-molecule pharmaceuticals contain residues of tailor-made AAs or structurally related diamines and amino-alcohols. Cyclic tailor-made AAs present a particular value to rational structural design by virtue of their local conformational constraints and are widely used in lead optimization programs. The present review article highlights 34 compounds, all of which are derived from cyclic AAs, representing recently-approved, small-molecule pharmaceuticals as well as promising drug candidates currently in various phases of clinical study. For each compound, the discussion includes the discovery, therapeutic profile and optimized synthesis, with a focus on the preparation of cyclic tailor-made AA as the principal structural feature. The present review article is intended to serve as a reference source for organic, medicinal and process chemists along with other professionals working in the fields of drug design and pharmaceutical discovery.


Asunto(s)
Aminoácidos Cíclicos/química , Preparaciones Farmacéuticas/química , Aminoácidos Cíclicos/síntesis química , Aminoácidos Cíclicos/farmacología , Animales , Línea Celular , Química Farmacéutica , Diseño de Fármacos , Humanos , Preparaciones Farmacéuticas/síntesis química
3.
J Phys Chem A ; 124(28): 5856-5870, 2020 Jul 16.
Artículo en Inglés | MEDLINE | ID: mdl-32497433

RESUMEN

The inherent conformational preferences of the neutral ß-peptide foldamer series, Ac-(ACHC)n-NHBn, n = 2-4, are studied in the gas phase using conformation-specific IR-UV double resonance methods. The cyclically constrained chiral ß-amino acid cis-2-aminocyclohexane carboxylic acid (ACHC) is designed to bring both right- and left-handed helices into close energetic proximity. Comparison of the infrared spectra in the NH stretch and amide I/II regions with the predictions of DFT calculations lead to the unambiguous assignment of four out of the six observed conformations of the molecules in this series, while corroborating computational and spectral evidence, affords tentative assignments of the remaining two conformers for which IR data were not recorded. The observed structures fall into one of two conformational families: a right-handed 12/10-mixed helix or its "cap-disrupted" left-handed helical analogue, which coexist with significant populations. Site-specific and stereospecific methylation on the cyclohexane backbone at the dipeptide (n = 2) level is also tested as a means to sterically lock in a predetermined cyclohexane chair conformation. These substitutions are proven to be a means of selectively driving formation of one helical screw sense or the other. Calculated relative energies and free energies of all possible structures for the molecules provide strong supporting evidence that the rigid nature of the ACHC residue confers unusual stability to the 12/10-mixed helix conformation, regardless of local environment, temperature, or C-terminal capping unit. The simultaneous presence of both handed helices offers unique opportunities for future studies of their interconversion.


Asunto(s)
Aminoácidos Cíclicos/química , Oligopéptidos/química , Ácidos Ciclohexanocarboxílicos/química , Ciclohexilaminas/química , Teoría Funcional de la Densidad , Enlace de Hidrógeno , Metilación , Modelos Químicos , Conformación Proteica en Hélice alfa , Termodinámica
4.
Chem Commun (Camb) ; 56(42): 5597-5600, 2020 May 27.
Artículo en Inglés | MEDLINE | ID: mdl-32400780

RESUMEN

We demonstrate in vitro incorporation of cyclic ß-amino acids into peptides by the ribosome through genetic code reprogramming. Further, we show that incorporation efficiency can be increased through the addition of elongation factor P.


Asunto(s)
Aminoácidos Cíclicos/química , Péptidos/síntesis química , Biosíntesis de Proteínas , Ribosomas/química , Aminoácidos Cíclicos/genética , Código Genético , Estructura Molecular , ARN de Transferencia/química
5.
Amino Acids ; 52(4): 567-585, 2020 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-32206933

RESUMEN

Herein, some new analogues of VV-hemorphin-7, modified at position 4 and 7 by the unnatural amino acids followed the structure Val-Val-Tyr-Xxx-Trp-Thr-Yyy-Arg-Phe-NH2, where Xxx is Ac5c (1-aminocyclopentanecarboxylic acid) or Ac6c (1-aminocyclohexane carboxylic acid) and Yyy is Dap (diaminopropanoic acid) or Dab (diaminobutanoic acid), were synthesized, characterized and investigated for anticonvulsant activity. The new synthetic peptide analogues were prepared by standard solid-phase peptide synthesis-Fmoc chemistry. A single intracerebroventricular (i.c.v.) injection at doses of 5, 10, and 20 µg/10 µl, respectively, was given before evaluation with timed intravenous pentylenetetrazole (ivPTZ) infusion test and 6-Hz psychomotor seizure test in mice. The acute neurological toxicity was determined using the rotarod test. To explain the structure-active properties of the modified peptides, some physicochemical characteristic was obtained. The FT-IR spectra and their second derivatives of the amide I, II, and III bands of the peptides show ß-sheet structure conformation. The calculation of isoelectric points, by potentiometric determination of dissociated constants, is in the range from 9.79 to 10.84. This study, for the first time, also reported on the reduction-oxidative potentials of the guanidine at Arg-moiety on such kind of peptides containing arginine and tyrosine residues in different medium and electrode surface. The VV-hemorphin-7 analogues 4 and 5 were the most active against the ivPTZ test, with the effect comparable to that of peptide 1 used as a positive control. Except compound 8, all other tested peptide analogues were ineffective to raise the threshold for the clonic seizures. The peptide analogue 5 showed 100% protection in the 6-Hz test, while the other seven VV-hemorphin-7 analogues have dose-dependent activity against psychomotor seizures comparable to 1. The novel peptides did not show neurotoxicity in the rotarod test.


Asunto(s)
Anticonvulsivantes/química , Anticonvulsivantes/farmacología , Hemoglobinas/química , Hemoglobinas/farmacología , Fragmentos de Péptidos/química , Fragmentos de Péptidos/farmacología , Aminoácidos Cíclicos/química , Animales , Anticonvulsivantes/síntesis química , Ácidos Ciclohexanocarboxílicos/química , Hemoglobinas/síntesis química , Ratones , Conformación Molecular , Oligopéptidos/química , Pentilenotetrazol , Fragmentos de Péptidos/síntesis química , Convulsiones/inducido químicamente , Convulsiones/prevención & control , Técnicas de Síntesis en Fase Sólida , Espectroscopía Infrarroja por Transformada de Fourier , Relación Estructura-Actividad
6.
J Am Chem Soc ; 142(11): 4965-4969, 2020 03 18.
Artículo en Inglés | MEDLINE | ID: mdl-32129615

RESUMEN

Because γ-amino acids generally undergo rapid self-cyclization upon esterification on the carboxyl group, for example, γ-aminoacyl-tRNA, there are no reports of the ribosomal elongation of γ-amino acids to the best of our knowledge. To avoid such self-cyclization, we utilized cyclic γ-amino acids and demonstrated their elongation into a peptide chain. Although the incorporation of the cyclic γ-amino acids is intrinsically slow, we here show that the combination of elongation factor P and engineered tRNAs improves cyclic γ-amino acid incorporation efficiency. Via this method, thioether-macrocyclic peptides containing not only cyclic γ-amino acids but also d-α-, N-methyl-α-, and cyclic ß-amino acids were expressed under the reprogrammed genetic code. Ribosomally synthesized macrocyclic peptide libraries containing cyclic γ-amino acids should be applicable to in vitro screening methodologies such as mRNA display for discovering novel peptide drugs.


Asunto(s)
Aminoácidos Cíclicos/química , Código Genético , Oligopéptidos/química , Extensión de la Cadena Peptídica de Translación , Péptidos Cíclicos/química , Ribosomas/genética , Aminoácidos Cíclicos/genética , Oligopéptidos/genética , Factores de Elongación de Péptidos , Péptidos Cíclicos/genética , ARN de Transferencia/genética
7.
Chemistry ; 26(26): 5846-5858, 2020 May 07.
Artículo en Inglés | MEDLINE | ID: mdl-31999874

RESUMEN

Cyclic peptides with disc-shaped structures have emerged as potent building blocks for the preparation of new biomaterials in fields ranging from biological to material science. In this work, we analyze in depth the self-assembling properties of a new type of cyclic peptides based on the alternation of α-residues and cyclic δ-amino acids (α,δ-CPs). To examine the preferred stacking properties adopted by cyclic peptides bearing this type of amino acids, we carried out a synergistic in vitro/in silico approximation by using simple dimeric models and then extended to nanotubes. Although these new cyclic peptides (α,δ-CPs) can interact either in a parallel or antiparallel fashion, our results confirm that although the parallel ß-sheet is more stable, it can be switched to the antiparallel stacking by choosing residues that can establish favorable cross-strand interactions. Moreover, the subsequent comparison by using the same methodology but applied to α,γ-CPs models, up to the moment assumed as antiparallel-like d,l-α-CPs, led to unforeseen conclusions that put into question preliminary conjectures about these systems. Surprisingly, they tend to adopt a parallel ß-sheet directed by the skeleton interactions. These results imply a change of paradigm with respect to cyclic peptide designs that should be considered for dimers and nanotubes.


Asunto(s)
Aminoácidos Cíclicos/química , Péptidos Cíclicos/química , Proteínas/química , Simulación por Computador , Enlace de Hidrógeno , Conformación Proteica en Lámina beta
8.
Amino Acids ; 51(9): 1247-1257, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31350614

RESUMEN

Somatostatin (SST) is an endogenous cyclic tetradecapeptide hormone that exerts multiple biological activities via a family of five receptors. BIM-23052 (DC-23-99) D-Phe-Phe-Phe-D-Trp-Lys-Thr-Phe-Thr-NH2 is a linear SST analog with established in vitro GH-inhibitory activity and high affinity to sstr5, sstr3 and sstr2. The different SSTR subtypes are expressed in different tissues and in some tumor cells. Based on this finding, a series of new analogs of BIM-23052 with expected antitumor activity have been synthesized. The Thr at position 6 in BIM-23052 was replaced by the conformationally hindered Tle, Aib, Ac5c and Ac6c of the new analogs. The peptides were synthesized by standard solid-phase peptide chemistry methods, Fmoc strategy. The cytotoxic effects of the compounds were tested in vitro against a panel of tumor cell lines: HT-29, MDA-MB-23, Hep-G2, HeLa and the normal human diploid cell line Lep-3. All five somatostatin receptor subtypes were modeled and docking was performed to determine the binding affinity of the analogs. The new peptides exhibited different concentration-dependent antiproliferative effect on the tumor cell lines after 24 h of treatment. The compound 3B (Aib6) demonstrated the most pronounced antiproliferative effects on HepG-2 cells with the IC50 = 0.01349 nM. Docking confirmed that all compounds bind well to SST receptors with preference to sstr3 and sstr5, which is most probably the reason for the observed biological effects.


Asunto(s)
Aminoácidos/química , Antineoplásicos/química , Somatostatina/análogos & derivados , Aminoácidos Cíclicos/química , Ácidos Aminoisobutíricos/química , Antineoplásicos/síntesis química , Antineoplásicos/farmacología , Línea Celular Tumoral , Técnicas de Química Sintética , Ácidos Ciclohexanocarboxílicos/química , Cicloleucina/química , Células HT29 , Células HeLa , Humanos , Simulación del Acoplamiento Molecular , Péptidos/síntesis química , Péptidos/farmacología , Receptores de Somatostatina/química , Somatostatina/química , Somatostatina/farmacología , Relación Estructura-Actividad
9.
Chirality ; 31(8): 547-560, 2019 08.
Artículo en Inglés | MEDLINE | ID: mdl-31241803

RESUMEN

Peptide models built from cis- and trans-2-aminocyclobutane-1-carboxylic acids (ACBCs) are studied in the solid phase by combining Fourier-transform infrared spectroscopy (FTIR) absorption spectroscopy, vibrational circular dichroism (VCD), and quantum chemical calculations using density functional theory (DFT). The studied systems are N-tert-butyloxycarbonyl (Boc) derivatives of 2-aminocyclobutanecarboxylic acid (ACBC) benzylamides, namely Boc-(cis-ACBC)-NH-Bn and Boc-(trans-ACBC)-NH-Bn. These two diastereomers show very different VCD signatures and intensities, which of the trans-ACBC derivative being one order of magnitude larger in the region of the ν (CO) stretch. The spectral signature of the cis-ACBC derivative is satisfactorily reproduced by that of the monomer extracted from the solid-state geometry of related ACBC derivatives, which shows that no long-range effects are implicated for this system. In terms of hydrogen bonds, the geometry of this monomer is intermediate between the C6 and C8 structures (exhibiting a 6- or 8-membered cyclic NH⋯O hydrogen bond) previously evidenced in the gas phase. The benzyl group must be in an extended geometry to reproduce satisfactorily the shape of the VCD spectrum in the ν (CO) range, which qualifies VCD as a potential probe of dispersion interaction. In contrast, reproducing the IR and VCD spectrum of the trans-ACBC derivative requires clusters larger than four units, exhibiting strong intermolecular H-bonding patterns. A qualitative agreement is obtained for a tetramer, although the intensity enhancement is not reproduced. These results underline the sensitivity of VCD to the long-range organisation in the crystal.


Asunto(s)
Aminoácidos Cíclicos/química , Amidas/química , Aminoácidos Cíclicos/síntesis química , Dicroismo Circular , Cristalografía por Rayos X , Teoría Funcional de la Densidad , Gases/química , Enlace de Hidrógeno , Espectroscopía Infrarroja por Transformada de Fourier , Estereoisomerismo
10.
J Am Chem Soc ; 141(26): 10530-10537, 2019 07 03.
Artículo en Inglés | MEDLINE | ID: mdl-31188574

RESUMEN

Electrophilic aminations involve an umpolung of a nitrogen atom, providing an alternate, distinctive synthetic strategy. The recent advent of various designed O-substituted hydroxylamines has significantly advanced this research field. An underappreciated issue is atom economy of the transformations: The necessary activating group on the oxygen atom is left in coproduced waste. Herein, we describe Rh-catalyzed electrophilic amination of substituted isoxazolidin-5-ones for the synthesis of unprotected, cyclic ß-amino acids featuring either benzo-fused or spirocyclic scaffolds. Using the cyclic hydroxylamines allows for retaining both nitrogen and oxygen functionalities in the product. The traceless, redox neutral process proceeds on a gram scale with as little as 0.1 mol % catalyst loading. In contrast to related electrophilic aminations in the literature, a series of mechanistic experiments suggests a unique pathway involving spirocyclization, followed by the skeletal rearrangement. The insights provided herein shed light on a nuanced reactivity of the active species, Rh-nitrenoid generated from the activated hydroxylamine, and extend the knowledge on electrophilic aromatic substitutions.


Asunto(s)
Aminoácidos Cíclicos/síntesis química , Aminación , Aminoácidos Cíclicos/química , Catálisis , Isoxazoles/química , Estructura Molecular , Rodio/química
11.
Mol Biotechnol ; 61(9): 650-662, 2019 Sep.
Artículo en Inglés | MEDLINE | ID: mdl-31201604

RESUMEN

1-Aminocyclopropane carboxylic acid oxidase (ACCO) catalyzes the last step of ethylene biosynthesis in plants. Although some sets of structures have been described, there are remaining questions on the active conformation of ACCO and in particular, on the conformation and potential flexibility of the C-terminal part of the enzyme. Several techniques based on the introduction of a probe through chemical modification of amino acid residues have been developed for determining the conformation and dynamics of proteins. Cysteine residues are recognized as convenient targets for selective chemical modification of proteins, thanks to their relatively low abundance in protein sequences and to their well-mastered chemical reactivity. ACCOs have generally 3 or 4 cysteine residues in their sequences. By a combination of approaches including directed mutagenesis, activity screening on cell extracts, biophysical and biochemical characterization of purified enzymes, we evaluated the effect of native cysteine replacement and that of insertion of cysteines on the C-terminal part in tomato ACCO. Moreover, we have chosen to use paramagnetic labels targeting cysteine residues to monitor potential conformational changes by electron paramagnetic resonance (EPR). Given the level of conservation of the cysteines in ACCO from different plants, this work provides an essential basis for the use of cysteine as probe-anchoring residues.


Asunto(s)
Aminoácido Oxidorreductasas/química , Aminoácidos Cíclicos/química , Cisteína/química , Etilenos/química , Óxidos de Nitrógeno/química , Proteínas de Plantas/química , Solanum lycopersicum/enzimología , Aminoácido Oxidorreductasas/genética , Aminoácido Oxidorreductasas/metabolismo , Sustitución de Aminoácidos , Aminoácidos Cíclicos/metabolismo , Sitios de Unión , Clonación Molecular , Cisteína/metabolismo , Espectroscopía de Resonancia por Spin del Electrón , Escherichia coli/genética , Escherichia coli/metabolismo , Etilenos/biosíntesis , Expresión Génica , Vectores Genéticos/química , Vectores Genéticos/metabolismo , Cinética , Solanum lycopersicum/química , Modelos Moleculares , Mutagénesis Sitio-Dirigida , Óxidos de Nitrógeno/metabolismo , Proteínas de Plantas/genética , Proteínas de Plantas/metabolismo , Unión Proteica , Conformación Proteica en Hélice alfa , Conformación Proteica en Lámina beta , Dominios y Motivos de Interacción de Proteínas , Proteínas Recombinantes/química , Proteínas Recombinantes/genética , Proteínas Recombinantes/metabolismo , Marcadores de Spin , Especificidad por Sustrato
12.
Amino Acids ; 51(4): 669-678, 2019 Apr.
Artículo en Inglés | MEDLINE | ID: mdl-30758725

RESUMEN

The synthesis of α/ß-chimeras comprises peptide bond formation from α- to ß-, from ß- to ß-, and from ß- to α-amino acid residues. The fine-tuned solid phase synthesis of -GXXG- chimera peptides containing the simplest achiral α-amino acid glycine and two cyclic SAAs of different ring size [X denoting cyclic ß-Sugar Amino Acids (ß-SAA)] is reported, variants containing Fmoc-RibAFU(ip)-OH a furanoid-, and Fmoc-GlcAPU(Me)-OH a pyranoid-type structural "Lego-element". Systematic search for the best coupling strategy with both H-ß-SAA-OHs is described, including the comparison of the different coupling reagents and conditions. Selecting the optimal reagent (from commonly used PyBOP, HATU and HOBt) was assisted by time-resolved 1H-NMR: formation and stability of the Fmoc protected active esters were compared. We found that PyBOP is the best choice for successfully coupling both H-ß-SAA-OH prototypes. The present comparative results open a reasonable route for building efficiently various -ß-SAA- containing homo- and heterooligomers.


Asunto(s)
Aminoácidos Cíclicos/química , Amino Azúcares/química , Biosíntesis de Péptidos , Fragmentos de Péptidos/síntesis química , Técnicas de Síntesis en Fase Sólida
13.
Bioorg Med Chem Lett ; 29(2): 297-301, 2019 01 15.
Artículo en Inglés | MEDLINE | ID: mdl-30470494

RESUMEN

Analogs based on the 2-aminobicyclo[3.1.0]hexane-2,6-dicarboxylate scaffold showed high potency and selectivity as both group II mGlu receptors orthosteric agonists and antagonists. This scaffold was initially designed to mimic the fully extended glutamate backbone conformation that was hypothesized to be the active conformation for the group II mGlu receptors. With the availability of crystal structures of l-Glu-bound amino terminal domain proteins from multiple mGlu receptor subtypes spanning all three subgroups, a new steric hindrance hypothesis was proposed to account for the scaffold's unique group II selectivity that explores the subtle distance differences between the α-carbon of l-Glu and the center of the tyrosine phenyl ring from the bottom lobe (e.g. Y216 of mGlu2).


Asunto(s)
Aminoácidos Cíclicos/farmacología , Ácidos Dicarboxílicos/farmacología , Receptores de Glutamato Metabotrópico/agonistas , Receptores de Glutamato Metabotrópico/antagonistas & inhibidores , Aminoácidos Cíclicos/química , Animales , Ácidos Dicarboxílicos/química , Relación Dosis-Respuesta a Droga , Humanos , Estructura Molecular , Ratas , Receptores de Glutamato Metabotrópico/metabolismo , Relación Estructura-Actividad
14.
Biomed Res Int ; 2018: 1470305, 2018.
Artículo en Inglés | MEDLINE | ID: mdl-30519568

RESUMEN

Endophytic actinomycetes are a promising source of novel metabolites with diverse biological activities. Tea plants (Camellia sinensis) produce arsenals of phytochemicals, which are linked to a number of medicinal and nutritional properties. However, a systematic investigation into the abundance and diversity of cultivated actinomycetes residing in tea plants has not been performed. In this study, a total of 46 actinobacteria were recovered from leaf, stem, and root samples of 15 tea cultivars collected in Fujian province, China. Their abundance and diversity were shown to be influenced by both the genotypes and tissue types of tea plants. Based on 16S RNA sequence analysis, these isolates were taxonomically grouped into 11 families and 13 genera, including Streptomyces, Actinomadura, Kribbella, Nocardia, Kytococcus, Leifsonia, Microbacterium, Micromonospora, Mobilicoccus, Mycobacterium, Nocardiopsis, Piscicoccus, and Pseudonocardia. The genus Streptomyces was most prevalent whereas rare genera, Mobilicoccus and Piscicoccus, were reported for the first time to occur as plant endophytes. PCR screening of polyketide synthase genes (PKS-I and PKS-II) and nonribosomal peptide synthetase genes (NRPS), along with antimicrobial assays against a set of bacterial and fungal pathogens, showed that endophytic actinomycetes associated with tea plants have a high potential for producing antimicrobial metabolites. Furthermore, indole acetic acid (IAA) production and 1-aminocyclopropane-1-carboxylic acid (ACC) deaminase activities were recorded in 93.5% and 21.7% of all isolates, respectively. Overall, these results indicate that endophytic actinomycetes from tea plants represent a valuable source of bioactive metabolites with antibacterial, antifungal, and plant-growth-promoting properties.


Asunto(s)
Actinobacteria/aislamiento & purificación , Antibacterianos/aislamiento & purificación , Endófitos/aislamiento & purificación , Té/microbiología , Actinobacteria/química , Actinobacteria/clasificación , Actinobacteria/genética , Aminoácidos Cíclicos/química , Antibacterianos/química , Antibacterianos/farmacología , China , Endófitos/química , Ácidos Indolacéticos/química , Filogenia , Desarrollo de la Planta/efectos de los fármacos , ARN Ribosómico 16S/genética
15.
Molecules ; 23(5)2018 05 06.
Artículo en Inglés | MEDLINE | ID: mdl-29734782

RESUMEN

Lysine-specific demethylase 1 (LSD1) mainly removes methyl groups of mono- or di-methylated lysine residues at the fourth position of histone H3 to epigenetically regulate the expression of genes associated with several diseases, such as cancer. Therefore, LSD1 inactivators are expected to be used as therapeutic agents. In this study, to identify novel peptide-based LSD1 inactivators, we focused on the X-ray structure of LSD1 complexed with a H3 peptide-based suicide substrate. It has been proposed that a methylated histone substrate forms three consecutive γ-turn structures in the active pocket of LSD1. Based on this, we designed and synthesized novel histone H3 peptide-based LSD1 inactivators 2a⁻c by incorporating various α,α-disubstituted amino acids with γ-turn-inducing structures. Among synthetic peptides 2a⁻c, peptide 2b incorporating two 1-aminocyclohexanecarboxylic acids at both sides of a lysine residue bearing a trans-2-phenylcyclopropylamine (PCPA) moiety, which is a pharmacophore for LSD1 inactivation, was the most potent and selective LSD1 inactivator. These findings are useful for the further development of histone H3 peptide-based LSD1 inactivators.


Asunto(s)
Aminoácidos/síntesis química , Inhibidores Enzimáticos/síntesis química , Histona Demetilasas/antagonistas & inhibidores , Histonas/química , Lisina/química , Péptidos/síntesis química , Aminoácidos Cíclicos/química , Dominio Catalítico , Ácidos Ciclohexanocarboxílicos/química , Diseño de Fármacos , Pruebas de Enzimas , Inhibidores Enzimáticos/farmacología , Histona Demetilasas/química , Histona Demetilasas/metabolismo , Histonas/metabolismo , Humanos , Hidrólisis , Isoenzimas/química , Isoenzimas/metabolismo , Lisina/metabolismo , Metilación , Simulación del Acoplamiento Molecular , Monoaminooxidasa/química , Monoaminooxidasa/metabolismo , Péptidos/farmacología , Unión Proteica , Dominios y Motivos de Interacción de Proteínas , Estructura Secundaria de Proteína , Relación Estructura-Actividad , Tranilcipromina/química
16.
J Chromatogr A ; 1535: 72-79, 2018 Feb 02.
Artículo en Inglés | MEDLINE | ID: mdl-29307528

RESUMEN

In the present work the effects of N-methylation and N-amidination of ampholytic cyclic ß-amino acids on their retention and enantioseparation characteristics on Cinchona alkaloid- and sulfonic acid-based zwitterionic chiral selectors, namely Chiralpak ZWIX(+)™ and ZWIX(-)™ columns are described. In a polar-ionic mobile phase, a double ion-pairing interaction mechanism takes place between the charged sites of the chiral analytes (the selectands) and the chiral selector moieties. As a support to correlate the chromatographic results with the structural details of the analytes, pKa values and van der Waals volumes of the substituted amino groups were calculated. In order to ensure better understanding of the mechanistic details of the chromatographic system the composition of the bulk solvent, the role of acid base additives, the concentration of the counter-ions, temperature and the structures of the ampholytic analytes have been investigated. Applying N-Fmoc protection, the ampholytic character of the analytes diminished, leading to a marked loss of retention. In the temperature range studied (5-40 °C) thermodynamic parameters, such as the difference in the standard enthalpy change Δ(ΔH°), entropy Δ(ΔS) and Gibbs energy Δ(ΔG°) were calculated from linear van't Hoff plots derived from the ln α vs. 1/T curves. The values of the thermodynamic parameters depended on the structures of the chiral selectors applied and the analytes studied.


Asunto(s)
Aminoácidos Cíclicos/química , Cromatografía Liquida/métodos , Alcaloides de Cinchona/química , Ácidos Sulfónicos/química , Amidas/química , Metilación , Estereoisomerismo , Temperatura , Termodinámica
17.
Bioorg Med Chem ; 25(24): 6554-6562, 2017 12 15.
Artículo en Inglés | MEDLINE | ID: mdl-29097029

RESUMEN

Ascidiacyclamide [ASC, cyclo(-Ile-oxazoline-d-Val-thiazole-)2] is a cyclic octapeptide isolated from tunicates. We designed ASC analogues [cyclo(-Ile-Xxx-d-Val-thiazole-)2] in which Pro or a homologue was substituted for oxazoline: [Pro]ASC (Xxx: proline), [Aze]ASC (Xxx: (S)-Azetidine-2-carboxylic acid), [Pip]ASC (Xxx: (S)-Piperidine-2-carboxylic acid) and [ΔPro]ASC (Xxx: (S)-3-pyrroline-2-carboxylic acid) to explore their potential to serve as substitutes for the oxazoline ring. The conformations of these analogues were examined using X-ray diffraction, 1H NMR and CD spectroscopy. In both the crystal and solution states, the conformations of [Pro]ASC, [Aze]ASC and [ΔPro]ASC were novel square structures having two trans imide bonds and stabilized by two intramolecular hydrogen bonds. The crystal structure of [Pip]ASC was a folded conformation with cis and trans imide bonds. Three isomers (cc, ct and tt) were present in a solution of [Pip]ASC. From crystal structures, the degree of puckering in the side chains of Pro and its homologues was estimated to be in the order Pip > Pro > Aze > ΔPro. [Pro]ASC and [Pip]ASC showed strong cytotoxicity, but [Aze]ASC and [ΔPro]ASC showed no cytotoxicity. Among the four analogues, there is consistency between the prolyl ring puckering and cytotoxicity, but not between the peptide backbone structure and cytotoxicity.


Asunto(s)
Aminoácidos Cíclicos/química , Oxazoles/química , Péptidos Cíclicos/química , Supervivencia Celular/efectos de los fármacos , Cristalografía por Rayos X , Relación Dosis-Respuesta a Droga , Células HL-60 , Humanos , Modelos Moleculares , Conformación Molecular , Péptidos Cíclicos/síntesis química , Relación Estructura-Actividad
18.
Amino Acids ; 49(9): 1441-1455, 2017 09.
Artículo en Inglés | MEDLINE | ID: mdl-28634827

RESUMEN

Peptide-based drug research has received high attention in the field of medicinal chemistry over the past decade. For drug design, to improve proteolytic stability, it is desirable to include unnatural building blocks, such as conformationally restricted ß-amino acid moieties, into the peptide sequence. Accordingly, the synthesis and incorporation of such conformationally rigid systems into novel type of peptides has gained large interest. Our research group has designed highly efficient methods for the construction of potential antimicrobial peptides. Moreover, a number of synthetic approaches have been developed for the synthesis of various pharmacologically interesting cyclic ß-amino acid derivatives as monomers with multiple stereogenic centers.


Asunto(s)
Aminoácidos Cíclicos/química , Péptidos Catiónicos Antimicrobianos/síntesis química , Diseño de Fármacos , Péptidos/síntesis química , Peptidomiméticos/síntesis química , Secuencia de Aminoácidos , Química Farmacéutica , Técnicas Químicas Combinatorias , Humanos , Estructura Secundaria de Proteína
19.
Cancer Biother Radiopharm ; 31(8): 295-301, 2016 Oct.
Artículo en Inglés | MEDLINE | ID: mdl-27754748

RESUMEN

Improving the in vivo pharmacokinetics (PK) of positron emission tomography (PET) radiotracers is of critical importance to tumor diagnosis and therapy. In the case of peptide-based radiotracers, the modification and addition of a linker or spacer functional group often offer faster in vivo pharmacokinetic behavior. In this study, the authors introduced two new PEGlyated dimeric c(RGD-ACH-K) conjugates, in which an aminocyclohexane carboxylic acid (ACH) is inserted into the ring chain of the cyclic RGD peptides, with a common bifunctional chelator (DOTA or NOTA) used for labeling with radiometals (including 68Ga and 64Cu). The addition of polyethylene glycol (PEG) and dimerization of c(RGD-ACH-K) affected the PK of the renal system and the tumor-targeting ability, relative to unmodified molecule. As a result, both 64Cu-DOTA-E[c(RGD-ACH-K)]2 (complex 1) and 64Cu-NOTA-E[c(RGD-ACH-K)]2 (complex 2) exhibited specific tumor-targeting properties relative to tumor-blocking control group, most likely resulting from improved in vivo tumor imaging. The in vivo tumor-to-blood ratio of the 64Cu(NOTA) complex shows better PET imaging than that of the 64Cu(DOTA) complex, which should lead to improved dosimetry and increased suitability for noninvasive monitoring of tumor growth or tumor-targeted radionuclide therapy.


Asunto(s)
Aminoácidos Cíclicos/química , Neoplasias Encefálicas/diagnóstico por imagen , Ácidos Ciclohexanocarboxílicos/química , Glioma/diagnóstico por imagen , Oligopéptidos/química , Polietilenglicoles/química , Tomografía de Emisión de Positrones/métodos , Radiofármacos/farmacocinética , Aminoácidos Cíclicos/farmacocinética , Animales , Neoplasias Encefálicas/metabolismo , Línea Celular Tumoral , Radioisótopos de Cobre/química , Ácidos Ciclohexanocarboxílicos/farmacocinética , Dimerización , Femenino , Glioma/metabolismo , Xenoinjertos , Humanos , Ratones , Ratones Endogámicos BALB C , Oligopéptidos/farmacocinética , Radiofármacos/química
20.
PLoS One ; 11(10): e0164785, 2016.
Artículo en Inglés | MEDLINE | ID: mdl-27764176

RESUMEN

Insulin secretagogues are used for treatment of type 2 diabetes. We attempted to discover novel small molecules to stimulate insulin secretion by using in silico similarity search using sulfonylureas as query, followed by measurement of insulin secretion. Among 38 compounds selected by in silico similarity search, we found three diphenylsemicarbazides and one quinolone that stimulate insulin secretion. We focused on compound 8 (C8), which had the strongest insulin-secreting effect. Based on the structure-activity relationship of C8-derivatives, we identified diphenylthiosemicarbazide (DSC) 108 as the most potent secretagogue. DSC108 increased the intracellular Ca2+ level in MIN6-K8 cells. Competitive inhibition experiment and electrophysiological analysis revealed sulfonylurea receptor 1 (SUR1) to be the target of DSC108 and that this diphenylthiosemicarbazide directly inhibits ATP-sensitive K+ (KATP) channels. Pharmacokinetic analysis showed that DSC108 has a short half-life in vivo. Oral administration of DSC108 significantly suppressed the rises in blood glucose levels after glucose load in wild-type mice and improved glucose tolerance in the Goto-Kakizaki (GK) rat, a model of type 2 diabetes with impaired insulin secretion. Our data indicate that DSC108 is a novel insulin secretagogue, and is a lead compound for development of a new anti-diabetic agent.


Asunto(s)
Aminoácidos Cíclicos/farmacología , Hipoglucemiantes/farmacología , Insulina/metabolismo , Potenciales de la Membrana/efectos de los fármacos , Semicarbacidas/farmacología , Tiosemicarbazonas/farmacología , Administración Oral , Aminoácidos Cíclicos/química , Aminoácidos Cíclicos/metabolismo , Aminoácidos Cíclicos/uso terapéutico , Animales , Glucemia/análisis , Calcio/metabolismo , Línea Celular , Diabetes Mellitus Experimental/tratamiento farmacológico , Diabetes Mellitus Experimental/patología , Prueba de Tolerancia a la Glucosa , Gliburida/farmacología , Gliburida/uso terapéutico , Semivida , Hipoglucemiantes/química , Hipoglucemiantes/metabolismo , Hipoglucemiantes/uso terapéutico , Secreción de Insulina , Islotes Pancreáticos/efectos de los fármacos , Islotes Pancreáticos/metabolismo , Canales KATP/antagonistas & inhibidores , Canales KATP/metabolismo , Masculino , Ratones , Ratones Endogámicos C57BL , Unión Proteica , Ratas , Semicarbacidas/sangre , Semicarbacidas/química , Semicarbacidas/metabolismo , Relación Estructura-Actividad , Compuestos de Sulfonilurea/química , Compuestos de Sulfonilurea/metabolismo , Compuestos de Sulfonilurea/farmacología , Receptores de Sulfonilureas/antagonistas & inhibidores , Receptores de Sulfonilureas/metabolismo , Tiosemicarbazonas/química , Tiosemicarbazonas/metabolismo , Tiosemicarbazonas/uso terapéutico
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